Stars
A tiny scalar-valued autograd engine and a neural net library on top of it with PyTorch-like API
OMOP v5.4 on FHIR R4 with SQL Render
Definition and DDLs for the OMOP Common Data Model (CDM)
AlphaFold 3 inference pipeline.
Open source code for AlphaFold 2.
Quantification of transposable element expression using RNA-seq
Structural variant and indel caller for mapped sequencing data
Group specific Oligonucleotide analysis for Metagenomic samples
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Automatically exported from code.google.com/p/ea-utils
Preprocessing tools for unique molecular index (UMI) sequencing reads
Windowed Adaptive Trimming for fastq files using quality
A quality control analysis tool for high throughput sequencing data
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
A collection of perl and R scripts to format COSMIC mutational datasets and extract mutational signature information.