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5 stars written in Perl
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GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

Perl 148 6 Updated Apr 13, 2026

Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes; package also includes orthogonal program Islander

Perl 19 5 Updated Sep 2, 2025

A Modern Perl Framework for High Throughput Sequencing analysis

Perl 17 2 Updated May 6, 2020

Download NCBI assembly genomes with ftp. rsync, ascp

Perl 12 Updated Aug 2, 2022

long reads assembly with Flye and Pilon

Perl 4 Updated Nov 11, 2022