CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

A two-channel differential amplifier with band-pass filter settings and potential for more

Electric Field Simulation for Weakly Electric fish

Smart fishfinders for better EOD recordings of electric fish in the field.

A genome visualization python package for comparative genomics

Itty.bitty is a tool to create links that contain small sites

Expose your local web server to the internet with a public URL.

A genome browser designed for complex structural variants and long reads.

💻 Democratizing Snippet Management (macOS/Win/Linux)

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.

RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

DNA barcoding using MinION

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…

Notebook service

Cloud-native genomic dataframes and batch computing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline

Tools for processing and analyzing structural variants.

GATK pipeline compatible with Cirrus

🐳 WebApollo Docker Image

reference-free ddRADseq analysis tools