PREMISE: A probabilistic framework for source assignment of Illumina reads

Pure-Rust SMB2/3 client. Faster than native macOS SMB on all operations. No C dependencies.

Knowledge graph embedding models

Semantic code search with local embeddings and call-graph intelligence. 54 languages. 50.0% R@1 / 71.6% R@5 / 87.2% R@20 on dual-judge eval.

Phage Annotation using Protein Structures

Unofficial attempt at a Typst template for the Oxford Bioinformatics journal

bedpull - Pull the query sequence from bam or fasta references using a bed file

Apache Paimon Vector Index: pure Rust IVF-PQ for data lake vector search.

Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

OxiBLAS is a production-grade, pure Rust implementation of BLAS (Basic Linear Algebra Subprograms) and LAPACK (Linear Algebra PACKage). Designed as the foundational linear algebra library for the S…

cross-platform Rust API for memory mapped IO

Maps where keys are borrowed from values.

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

Nanopore Adaptive Sampling VARiant caller

An extensible and performant aligner and read mapper

A library for easy, fast, and efficient reading & writing of PLINK Bed files

A SD/MMC library with FAT16/FAT32 support, suitable for Embedded Rust systems

A SD/MMC library with FAT16/FAT32 support, suitable for Embedded Rust systems

Hierarchical k-mer sets

memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort

rust tool to choose the best read alignment between haploids to a diploid reference genome

streamVbyte in pure rust for u16/u32/u64 plus extras