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Starred repositories
The Moby Project - a collaborative project for the container ecosystem to assemble container-based systems
Official code repository for GATK versions 4 and up
A structural variation pipeline for short-read sequencing
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Specifications of SAM/BAM and related high-throughput sequencing file formats
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Tools for manipulating biological data, particularly multiple sequence alignments
⭐ Linux / Windows / macOS 跨平台 V2Ray 客户端 | 支持 VMess / VLESS / SSR / Trojan / Trojan-Go / NaiveProxy / HTTP / HTTPS / SOCKS5 | 使用 C++ / Qt 开发 | 可拓展插件式设计 ⭐
Precision HLA typing from next-generation sequencing data
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
研究生数学建模，本科生数学建模、数学建模竞赛优秀论文，数学建模算法，LaTeX论文模板，算法思维导图，参考书籍，Matlab软件教程，PPT
A single molecule sequence assembler for genomes large and small.
Repository for speciation genomics website
HuixiangDou: Overcoming Group Chat Scenarios with LLM-based Technical Assistance
In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA allel…