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Relation extraction workflow for extracting diet, non-communicable disease and biomarker associations from literature

Python 4 Updated Jun 30, 2026

This repository contain the final files of my Imperial College London Biomedical Research (MRes) thesis project 1: Enhanced Multimodal Chest X-Ray Analysis Using Large Language Models and Vision Tr…

Jupyter Notebook 1 Updated Jun 11, 2026

Code repository for the creation and annotation of corpora in the CoDiet project

Python 4 Updated Jul 16, 2026
Jupyter Notebook 1 Updated Oct 16, 2025

A full-text article retrieval pipeline for biomedical literature.

Python 23 2 Updated Jul 9, 2026
Python 1 Updated Sep 8, 2022

Microbial Named Entity Recognition and Normalisation for AI-assisted Literature Review and Meta-Analysis

Python 3 2 Updated Jul 16, 2026

Named Entity Recognition pipeline program - UROP project on microbe recognition

Python 3 Updated May 27, 2024

LAVASET

Python 6 Updated Jan 30, 2026

Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardise text and table data extracted from full text publications. See Open Access publ…

HTML 24 10 Updated Aug 3, 2026

R package for integrating summary-level GWAS data with multi-omic Kyoto Encyclopaedia of Genes and Genomes network data

R 3 Updated Apr 9, 2022

Repository for 2nd project of 2019-2020 Imperial College MRes Biomedical Research (Data Science)

Python 1 Updated Mar 3, 2021
Python 1 Updated Aug 21, 2020
Python 1 Updated Sep 9, 2021