Decoding genomes • Building bioinformatics tools • Exploring biological complexity
I'm a computational genomics researcher and bioinformatics developer interested in understanding biological complexity through genomes, algorithms, and data.
My work spans comparative genomics, pathogen genomics, antimicrobial resistance, metagenomics, evolutionary genomics, and AI/ML-driven biological data analysis.
I enjoy turning biological questions into reproducible computational workflows, open-source tools, and interactive platforms.
- 🧬 Research: Comparative Genomics • Pathogen Genomics • AMR • Metagenomics • Evolution
- 🤖 Exploring: AI/ML for Genomics • Biological Foundation Models • Explainable AI • Genome Graphs
- 🛠️ Building: Bioinformatics tools, pipelines, databases & visualization platforms
- 🌐 Community: BioinformaticsOnline — open knowledge sharing for bioinformatics
- 💻 Open Source: Bioinformatics Laboratory
- 🤝 Collaborations: Genomics • AMR • Pathogen Surveillance • AI for Biology
✈️ Beyond code: Scientist by profession, explorer by instinct — a Vagabond Scientist 🌏
🧬 GENOMICS
│
┌────────────────┼────────────────┐
│ │ │
🦠 Pathogens 🧬 Evolution 🤖 AI / ML
│ │ │
├── AMR ├── HGT ├── Prediction
├── Fungi ├── SSRs ├── Biomarkers
├── Viruses ├── Synteny ├── XAI
└── Microbiome └── Genome └── Biological
Graphs Models
| Project | What it does | Domain |
|---|---|---|
| 🧬 Alienomics | Detects alien genes and horizontal gene transfer events | Evolutionary Genomics |
| 🔬 Bogsa | Large-scale comparative genome alignment and analysis | Comparative Genomics |
| 🧹 autoConTAMPR | Automated detection of contamination in sequencing datasets | NGS / QC |
| 🕸️ quadraG | Genome graph-based comparative genomics exploration | Genome Graphs |
| 🌐 BioinformaticsOnline | Community platform for bioinformatics knowledge sharing | Open Science |
Biology asks the questions. Data provides the clues. Algorithms help connect them.
🧬 Comparative & Evolutionary Genomics
🦠 Pathogen Genomics & Genomic Epidemiology
💊 Antimicrobial Resistance
🌎 One Health Genomics
🧫 Metagenomics & Microbiome Analysis
🕸️ Pangenomes & Genome Graphs
🤖 Machine Learning for Biological Data
🧠 AI / Foundation Models for Genomics
📊 Biological Data Visualization
⚙️ Reproducible Bioinformatics Pipelines
I am interested in computational approaches that connect multiple scales of biology:
Genome → Variation → Evolution → Phenotype → Population → One Health
The long-term goal is to develop open, interpretable, and scalable computational approaches that transform genomic data into biological and translational insights.
I'm interested in collaborations involving:
🧬 Genomics • 🦠 Pathogens • 💊 AMR • 🌎 One Health • 🤖 AI/ML • 🕸️ Genome Graphs • 🧫 Metagenomics • 🛠️ Bioinformatics Tool Development
If you have an interesting biological question and lots of genomic data, there is probably something we can build together.
📧 jnarayan81@gmail.com
📧 info@bioinformaticsonline.com