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biomformat Public
Biom file format support in R/Bioconductor, vers. 1.x (JSON) and 2.x (HDF5) https://bioconductor.org/packages/release/bioc/html/biomformat.html
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phyloseq Public
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
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meditron Public
Forked from epfLLM/meditronMeditron is a suite of open-source medical Large Language Models (LLMs).
Python Apache License 2.0 UpdatedApr 10, 2024 -
mcode-extraction-framework Public
Forked from mcode/mcode-extraction-frameworkA Node.js framework for extracting mCODE FHIR resources
JavaScript Apache License 2.0 UpdatedDec 12, 2023 -
NCT03893422 Public
Forked from wholebiome/NCT03893422Data-sharing repository for Randomized Clinical Trial NCT03893422 conducted by Pendulum Therapeutics.
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shiny-phyloseq Public
An interactive web application for demonstrating and using phyloseq.
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2018_ASM_Workshop Public
Forked from shandley/Microbiome-Analysis-Using-RCase study tutorial on using R to analyze microbiome data prepared for the 2018 ASM General Meeting in Atlanta, GA.
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dataviz Public
Forked from clauswilke/datavizA book covering the fundamentals of data visualization.
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biomformat-oldfork Public
This is deprecated. Please post issues at the BioC-synced joey711/biomformat
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dada2docker Public
Docker build instructions for DADA2 and related functionality
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rocker-versioned Public
Forked from rocker-org/rocker-versionedRun earlier versions of R using docker
Shell GNU General Public License v2.0 UpdatedJul 29, 2017 -
shinyFiles Public
Forked from thomasp85/shinyFilesA shiny extension for server side file access
R UpdatedJun 28, 2017 -
SUPER-FOCUS Public
Forked from metageni/SUPER-FOCUSA tool for agile functional analysis of shotgun metagenomic data
Python GNU General Public License v3.0 UpdatedJun 18, 2017 -
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phyloseq-article-2013 Public
The complete source for reproducing our 2013 PLoS ONE article describing the phyloseq package
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npSeq Public
Vanilla npSeq downloaded from http://www3.nd.edu/~jli9/research.html
R UpdatedDec 11, 2015 -
biomformat0 Public
Support for the biom file format in R/Bioconductor, versions 1.x (JSON) as well as 2.x (HDF5)
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ggplot2 Public
Forked from tidyverse/ggplot2An implementation of the Grammar of Graphics in R
R UpdatedJun 11, 2015 -
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oiLabs Public
Forked from andrewpbray/oiLabs-base-RSource files for OpenIntro Statistics labs
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A JavaScript visualization library for HTML and SVG.
JavaScript Other UpdatedAug 7, 2014 -
phyloseq-demo Public
Extended demonstrations of the phyloseq package
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waste-not-supplemental Public
Supplemental Materials for the "Waste Not, Want Not..." Article in PLoS Computational Biology
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MetaPathways Public
Forked from hallamlab/MetaPathwaysA modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
Nu UpdatedJan 27, 2014 -
rCharts_d3_sankey Public
Forked from timelyportfolio/rCharts_d3_sankeyrCharts implementation of d3 sankey plugin
R UpdatedSep 24, 2013
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