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Low-level Python library used to interact with a Substra network

Python 278 35 Updated Oct 14, 2024

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

Python 241 31 Updated Jul 7, 2026

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Python 760 87 Updated Aug 3, 2026

Optimal transport tools implemented with the JAX framework, to solve large scale matching problems of any flavor.

Python 752 136 Updated Jun 14, 2026

Poisson-based algorithm for stable inference of DNA Structure

Python 41 16 Updated Aug 9, 2026

Hardware accelerated, batchable and differentiable optimizers in JAX.

Python 1,056 75 Updated Jun 4, 2026

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Python 265 39 Updated Apr 7, 2026
Python 214 17 Updated Jan 31, 2022
C++ 25 13 Updated Oct 26, 2021