Commits

History for

Commits on Jan 24, 2019

2.7.0a
alexdobin
committed
4247708

Commits on Jan 23, 2019

2.7.0a
alexdobin
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d64e590
Merged solo into master. Getting ready for 2.7.0a.
alexdobin
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29dba6e

Commits on Jan 22, 2019

Final changes for solo* parameters.
alexdobin
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6ea9f77

Commits on Jan 15, 2019

Default transcriptome conversion options for STARsolo.
alexdobin
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8fce42f

Commits on Jan 9, 2019

Preliminary STARsolo release.
alexdobin
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fb2cdd0

Commits on Nov 16, 2018

2.6.1d
alexdobin
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909a3b9
Ready for 2.6.1d
alexdobin
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d89e188

Commits on Nov 5, 2018

Fixed the problem causing BAM sorting error with large number of threads and small ulimit -n.
alexdobin
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1cd4327

Commits on Oct 30, 2018

Fixed the bug causing inconsistent output for mate1/2 in the Unmapped files.
alexdobin
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a4fadc5

Commits on Oct 17, 2018

STAR_2.6.1c
alexdobin
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ffd8416
STAR_2.6.1c
alexdobin
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9ceb06c

Commits on Oct 1, 2018

Enforced the consistent choice of supplementary chimeric alignments for overlapping mates.
alexdobin
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eda1b0e

Commits on Sep 6, 2018

2.6.1b
alexdobin
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456c589

Commits on Aug 27, 2018

Fixed a problem with --outSAMfilter KeepOnlyAddedReferences option. Fixed a problem with output of an empty sorted BAM.
alexdobin
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58a13bc

Commits on Aug 14, 2018

Commits on Aug 13, 2018

Implemented --chimOutJunctionFormat 1 option to output some metadata (command lines and basic mapping statistics) at the end of Chimeric.out.junction file. Fixed a bug in merging mates (--peOverlap…
alexdobin
committed
5b15c52

Commits on Aug 12, 2018

Fixed the problem with control characters (ASCII<32) in genome and input read sequences. They used to be converted to N, now they are removed. Fixed the GtstrandBit problem. Another attempt to fix …
alexdobin
committed
d2e3761

Commits on Aug 9, 2018

Fixed a bug with multiple RG lines when inputting reads in SAM format. Fixed a bug causing seg-faults with sharead memory and --outStd options.
alexdobin
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a80ad80

Commits on Jul 20, 2018

Fixed another problem with alignment scoring with peOverlap option which may cause seg-faults in rare cases.
alexdobin
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e30c257

Commits on Jul 13, 2018

Fixed the problem with alignment scoring with peOverlap option which may cause seg-faults in rare cases.
alexdobin
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17f9128

Commits on Jun 14, 2018

Process substitution can now be used with zipped VCF files, e.g. --varVCFfile <(zcat vcf.gz) . Fixed a but with --outTmpDir and fifo files.
alexdobin
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8484b73

Commits on May 10, 2018

2.6.0c
alexdobin
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391d99f
Fixed problems with WASP filtering.
alexdobin
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96f1d60

Commits on May 7, 2018

Fixed the problem with Ns in the overlap region for the peOverlap algorithm.
alexdobin
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685b9e8

Commits on May 3, 2018

Fixed another bug in the peOverlap algorithm.
alexdobin
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4cdb99f

Commits on May 2, 2018

2.6.0b
alexdobin
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305d810
Fixed a few bugs detected by valgrind.
alexdobin
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02f2125

Commits on Apr 26, 2018

Fixed a bug that accidentally turns on --peOverlap* option and causes seg-fault.
alexdobin
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36fffb3

Commits on Apr 23, 2018

Mac executables
alexdobin
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4210432
Recompiled Linux executables.
alexdobin
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cf3c762
WASP filtering switched off for the 1st pass of the 2-pass mapping.
alexdobin
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68724db