Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
- 220 followers
- Stanford University
- https://kundajelab.github.io/
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chrombpnet
chrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
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atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
Repositories
Showing 10 of 200 repositories
- chrombpnet-refactor Public
A refactored version of ChromBPNet in PyTorch/TensorFlow/JAX: A Bias factorized, base-resolution deep learning models of chromatin accessibility
- bpnet-refactor Public
- MotifCompendium Public
- deeplift-extension-repro Public
Code to reproduce figures and results in the deeplift-extension paper
- Fi-NeMo Public
Identifying transcription factor binding sites from neural network contribution scores
- SMFNet Public
Official implementation of SMFNet, a discrete diffusion model of single-molecule footprinting reads
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