Search results

Bias model for single-end bulk ATAC-seq

Status: Open.

#283 In kundajelab/chrombpnet;

· snaqvi1990 opened on Jul 2, 2026

Invalid interval bounds while generaing prediction bigwigs

Status: Open.

#281 In kundajelab/chrombpnet;

· GalinaKoksharova opened on May 18, 2026

Potential impact of shift mismatch between bias model and training sample

Status: Open.

#280 In kundajelab/chrombpnet;

· ypauling opened on May 17, 2026

can you update the tensorflow vesion

Status: Open.

#279 In kundajelab/chrombpnet;

· BenxiaHu opened on Apr 10, 2026

Non-standard enzyme shift (+4/+4) when running ChromBPNet on cell-type subsetted SHARE-seq fragments

Status: Open.

#278 In kundajelab/chrombpnet;

· kgmuelle opened on Mar 26, 2026

Support cross-species training and prediction?

Status: Open.

#277 In kundajelab/chrombpnet;

· 09oulin opened on Mar 22, 2026

CPU usage in chrombpnet

Status: Open.

#276 In kundajelab/chrombpnet;

· conniecl opened on Mar 18, 2026

Bias Model pearsonR<-0.5

Status: Open.

#275 In kundajelab/chrombpnet;

· LabMiceNoveda opened on Mar 4, 2026

Can predicted scores for a specific region from different models be comparable?

Status: Open.

#274 In kundajelab/chrombpnet;

· 09oulin opened on Mar 3, 2026

Flanks of motif CWMs from chrombpnet model are rich in GCs?

Status: Open.

#272 In kundajelab/chrombpnet;

· 09oulin opened on Feb 24, 2026

DNase peak calling

Status: Open.

#271 In kundajelab/chrombpnet;

· cybluetree opened on Jan 18, 2026

Clarification on ChromBPNet Tracks Used in Extended Fig. 2B

Status: Open.

#270 In kundajelab/chrombpnet;

· tristan-ka opened on Dec 10, 2025