Positron, a next-generation data science IDE

Python library for immune repertoire analysis

A scanpy extension to analyse single-cell TCR and BCR data.

The world’s fastest framework for building websites.

Single-cell analysis in Python. Scales to >100M cells.

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

Cookiecutter template for scverse

Single cell trajectory detection

R extension library for rust designed to be familiar to R users.

A toolkit for single-cell immune profiling

Single cell RNA sequencing analysis course

A curated list of awesome ggplot2 tutorials, packages etc.

A library of free open source icons for science illustrations in biology and chemistry

Gene Set Enrichment Analysis in Python

Compute generation probabilities of CDR3 amino acid and nucleotide sequences

QuPath documentation

Reproducible Data Science environments for R with Nix

ggplot2 extension allowing for plotting various geometries as side panels using the ggplot2 API

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

Easy single cell analysis platform for enrichment

Draw heatmap simply using a tidy data frame

Uniform Manifold Approximation and Projection

A template for standard compliant snakemake-workflows

Collection of bioinformatics training materials

Visualising data frames as funky heatmaps 📊

The R Installation Manager

muon is a multimodal omics Python framework

Create beautiful Gantt charts with ggplot2