Stars
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
A small, auxiliary index to massively improve parallel fastq parsing
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
A local-haplotagging-based small and structural variant caller
Hierarchical Reasoning Model Official Release
Collection of self-contained header-only libraries for C++17
Tool to flag foldback and chimeric artifacts in long-read sequence alignment files
A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
Genomic interval operations on Pandas DataFrames
Pulumi - Infrastructure as Code in any programming language 🚀
A tool for multi-Allele-aware Structural Variant statistics Benchmarking for Multiple callsets
A better compressed bitset in Java: used by Apache Spark, Netflix Atlas, Apache Pinot, Tablesaw, and many others
A lightweight TUI application to view and query tabular data files, such as CSV, TSV, and parquet.
A new way to see and navigate directory trees : https://dystroy.org/broot
BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).
Video-based AI memory library. Store millions of text chunks in MP4 files with lightning-fast semantic search. No database needed.
The most comprehensive authentication framework for TypeScript
a python package for finding tandem repeats from genomic sequences