kircherlab
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- MPRAsnakeflow Public
With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.
kircherlab/MPRAsnakeflow’s past year of commit activity - CADD_threshold_app Public
kircherlab/CADD_threshold_app’s past year of commit activity - ISMB-2025_IGVF-MPRA-Tutorial Public
Main resource repository for the ISMB 2025 Tutorial IP2: Massively parallel reporter assays in functional regulatory genomics and as part of the IGVF data resource
kircherlab/ISMB-2025_IGVF-MPRA-Tutorial’s past year of commit activity - IGVF_MPRA_quantification Public
With this workflow you can use the output of MPRAsnakeflow (reporter experiment barcode file) together with the MPRA library sequence design file to quantify the MPRA reporter expression. It can quantify variants as well as elements. using BCalm.
kircherlab/IGVF_MPRA_quantification’s past year of commit activity - BCalm Public
kircherlab/BCalm’s past year of commit activity - CADD-scripts Public
CADD scripts release for offline scoring. For more information about CADD, please visit our website
kircherlab/CADD-scripts’s past year of commit activity - MPRAsnakeflow_tutorial Public
kircherlab/MPRAsnakeflow_tutorial’s past year of commit activity
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