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  • EMBL-EBI
  • Cambridge

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6 stars written in Java
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qupath / qupath

QuPath - Open-source bioimage analysis for research

Java 1,337 338 Updated Mar 31, 2026

micro-manager / micro-manager

Microscope control and image acquisition integrated with ImageJ

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A general illumination correction method for optical microscopy.

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Running compute-intense parts of BigStitcher distributed

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saalfeldlab / n5-utils

simple standalone BigDataViewer for multiple N5 (or HDF5) datasets

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