Stars
stitching together 5D OME-zarr from an input folder of microscope acquisition images
A set of Qt-based widgets onto the pymmcore-plus model
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex ima…
navigate - open source light-sheet microscope controls
Computational workflows to assess phototoxicity in live-cell microscopy experiments
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Lightweight C++ and Python interface for datasets in zarr and N5 format
Pure python/C++ micro-manager ecosystem
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
scivision: a framework for scientific image analysis
Python bindings for MMCore, Micro-Manager's device control layer
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
A module with convenience functions for writing Python code that interacts with OMERO.
A complete computer science study plan to become a software engineer.
Running compute-intense parts of BigStitcher distributed
An open access book on scientific visualization using python and matplotlib
Inspect relationships between napari-plugins in active workflows.
This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!