This repository contains the LaTeX files and sources for my note on Bit-twiddling on Nucleotides. It is an not peer-reviewed preprint. Comments are welcome.
Prerequisites: GCC, Clang, Google Benchmark and Python 3.
git clone https://github.com/kloetzl/biotwiddle
cd biotwiddle
make
This compiles the code, runs unit tests, benchmarks and uses those results for figures in the LaTeX files.
Though the findings reported in the paper are still mostly valid, this repository has been superseeded by libdna. Consider biotwiddle unmaintained.