Stars
YOLO training toolkit with Claude Code skills — dataset management, experiment tracking, HP tuning via model.tune(), active learning with CVAT, ONNX export. Supports YOLO11 & YOLO26.
OpenMMLab Detection Toolbox and Benchmark
IsUMap is a tool for manifold learning, dimension reduction and data visualization
Code & Models for 3DETR - an End-to-end transformer model for 3D object detection
Jupyter notebooks for learning how to use SimpleITK
Extension to import microCT data and conduct 3D morphometrics in Slicer
Coreutils for Windows: Installer & Packaging
A public MuSpAn page for community discussions and issue reporting.
Fiji plugin for Yolo image detection via Appose
3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.
Zoo Code gives you a whole dev team of AI agents in your code editor.
This repository provides DINOSim, a method that leverages the DINOv2 foundation model for zero-shot object detection and segmentation in bioimage analysis. DINOSim uses pretrained DINOv2 embeddings…
A napari plugin for user-guided 2D/3D segmentation: pair images with masks, train U-Net variants, compare metrics, and run inference on microscopy images directly inside napari.
napari plugin for annotation using Segment Anything (SAM) for instance segmentation and dataset creation
A napari plugin for interactive Segment Anything Model 3 (SAM3) segmentation using text, points, boxes, exemplar prompts, point-based refinement, and 3D/video-like propagation
A Fiji-Ilastik toolkit for the analysis of myelinated axons in electron microscopy data
An interactive Periodic Table of Elements app for the console!
Roo Code gives you a whole dev team of AI agents in your code editor.
kotofetch is a small, configurable CLI that displays Japanese quotes in the terminal.
A linter for scientific manuscripts
A comprehensive, build-ready reference for constructing a high-performance personal knowledge system using Obsidian and Claude Code, grounded in Andrej Karpathy's "LLM Wiki" pattern.
A tiny Raspberry Pi terrarium with real sun and moon cycles.
A TUI to convert Images to ANSI strings using bubbletea
Turn any PDF or image document into structured data for your AI. A powerful, lightweight OCR toolkit that bridges the gap between images/PDFs and LLMs. Supports 100+ languages.
Ink/Stitch: an Inkscape extension for machine embroidery design
SEMsimulator is a virtual scanning electron microscope developed for education and training.