Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

strange cross-platform, performance-oriented and interactive pangenome and large graph visualization

Collection of notebook guides created by the Brev.dev team!

genotype and visualize structural variants in the human pangenome graphs

The full training script for Enformer - Tensorflow Sonnet

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

Fork of FastQTL for SVs

An open access book on scientific visualization using python and matplotlib

GTEx & TOPMed data production and analysis pipelines

Create regional association plots from GWAS or meta-analysis

Data from the Human PanGenomics Project

Enhanced version of the FastQTL QTL mapper

Assemblies from HPP Year 1 production

Long read aligner for cyclic and acyclic pangenome graphs

Graphical Fragment Assembly (GFA) Format Specification

WGCNA for RNAseq data

⚡ Dynamically generated stats for your github readmes

Tools for manipulating sequence graphs in the GFA and rGFA formats

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

【编程随想】收藏的电子书清单（多个学科，含下载链接）

tools for working with genome variation graphs

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Detect somatic variants from tumor and normal WGS/WXS data

Tools for processing and analyzing structural variants.

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

Uniform Manifold Approximation and Projection

Trinity RNA-Seq de novo transcriptome assembly

RNA-seq aligner