An experiment to vibe-code a version of VEP with single binary 🤖

Independent benchmark of variant annotation/effect tools (Genome Nexus, Ensembl VEP, fastVEP, vibe-vep, OpenCRAVAT) against published cancer datasets (MSK-IMPACT, TCGA-GDC). Interactive report.

Interpreting cancer genomics data

Frontend for Genome Nexus 🎉 (alpha)

React Frontend of cBioPortal 🎉

Library and tool for annotating MAF files using Genome Nexus Webserver API

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/

Java API Client for Genome Nexus

Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

cBioPortal for Cancer Genomics

repository for Variants with Unexpected Effects (in cancer)

Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results

The HTAN Data Portal

Schema.org Data Models for HTAN

A resource for the integration of somatic with germline heritability in tumorigenesis

💻 Command line interface for Genome Nexus 🧬

Computational Biology Summer Program Hackathon

A community shared resource of Python and R Notebooks that utilize the cBioPortal API for various analysis recipes

Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.