RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

ChIP-seq peak-calling, QC and differential analysis pipeline.

ATAC-seq peak-calling and QC analysis pipeline

RNA-seq analysis pipeline for detection of gene-fusions

Config files used to define parameters specific to compute environments at different Institutions

Precision HLA typing from next-generation sequencing data

Whole Exome/Whole Genome Sequencing alignment pipeline

A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools