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The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
Somatic copy number analysis using WGS paired end wholegenome sequencing
identifying mutational significance in cancer genomes
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Differential analysis for ChIP-seq with biological replicates
Toolkit for benchmarking fusion transcript predictions
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
This repository contents a script to run e-Driver as well as the necessary files to reproduce the results presented in the paper describing the algorithm.