Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are formatted in LinkML (*.yaml).

A library of free open source icons for science illustrations in biology and chemistry

JAX-powered brain network simulation with gradient-based optimization

A web service for semi-automated conversion of raw imaging data to BIDS

Differentiable neuron simulations with biophysical detail on CPU, GPU, or TPU.

Open-Source Simulation platform for Deep Brain Stimulation

CortPro: Your cortical profiling toolbox

Solid Technical Reports

This repository includes the code required to reproduce the results in: "Targeting pre-stimulus brain states predicts and controls variability in stimulation responses"

Files related to running the HCP Pipelines using Docker

Open source DocuSign alternative. Create, fill, and sign digital documents ✍️

Massive Multimodal Open RAG & Extraction A scalable multimodal pipeline for processing, indexing, and querying multimodal documents Ever needed to take 8000 PDFs, 2000 videos, and 500 spreadsheets …

The Python interface to SPM

🔥 The free & Open Source DocuSign alternative

Surface to Tractography Real-time EEG Activation Mapping in 4 Dimensions

Multilingual Document Layout Parsing in a Single Vision-Language Model

A tool for AI-assisted meta-review of scientific papers

Odoo Alternative Reporting Engine

A desktop application that extracts YouTube playlist transcripts and enhances them using Google's Gemini AI models. The output is a book in any language you want.

Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

Julia package for simulating Dynamics on Networks

Nature color palette optimized for color-blind individuals

A simple screen parsing tool towards pure vision based GUI agent

Source code and files for Real World Data Science website.

Evaluation code used in the brain parcellation survey "Human brain mapping: A systematic comparison of parcellation methods for the human cerebral cortex".

Open Source Data Security Platform for Developers to Monitor and Detect PII, Anonymize Production Data and Sync it across environments.

🕸️ Web apps in pure Python 🐍

Messaging WebApp in Python (Flask + HTMX + Chope)

The Low Entropy Model Specification language: documentation, examples and Schema