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7 stars written in Perl
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Any Way to Show Multi genomic Synteny

Perl 223 21 Updated Jul 4, 2025

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

Perl 58 9 Updated Mar 29, 2021
Perl 41 18 Updated Apr 15, 2021

an empirical Bayesian framework for mutation detection from cancer genome sequencing data

Perl 31 9 Updated Apr 5, 2016

An et al. Nature Communications 2023

Perl 14 4 Updated Jan 19, 2023

Plugins for the Ensembl Variant Effect Predictor (VEP)

Perl 2 Updated May 16, 2019

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Perl 1 Updated Apr 22, 2019