Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.

A/B compartments for 12 cancer types estimated from TCGA methylation data

R package for CRAG

Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes

A collection of scripts for the calculation of Intra-Sample Heterogeneity Scores including FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL.

R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL

Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.

Tools for processing FAST5 files from Oxford Nanopore Devices