A genome diagram generator for microbes and organelles

ACCESSIBILITY.md — a simple, open format (aligned with AGENTS.md) for guiding coding agents to be more accessible

High-performance FASTQ/FASTA quality analysis tool written in Rust — HTML reports, adapter trimming, k-mer analysis, N50/N90, duplication estimation, and real-time TUI

Fast approximate string searching

Aggregate results from bioinformatics analyses across many samples into a single report.

Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️

BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.

MLST in a web browser

De novo genome assembly for long reads using an overlap graph

Next generation MLST toolkit

Complete source code of https://mytime.io - a website to convert any time zone to your local time zone.

Multiple samples showing best practices in app and watch face development on Wear OS.

LINcode assignment tool for Klebsiella

Python script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies

QC cutoffs for different genomes.

Identify phage regions in bacterial genomes for masking purposes

An efficient CLI to extract sequences from the SRA

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

An easy-to-use program to assign O1 Vibrio cholerae genomes to canonical lineages using phylogenetic placement.

The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples