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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMay 17, 2026 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 16, 2026 -
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yearbook-template Public template
A template for making a yearbook through the Jekyll framework https://lskatz.github.io/yearbook-template/
HTML UpdatedApr 25, 2026 -
any2fasta Public
Forked from tseemann/any2fastaConvert various sequence formats to FASTA
Perl GNU General Public License v3.0 UpdatedApr 15, 2026 -
awesome-bioinformatics-jobs Public
Resources for bioinformatics jobs
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Kalamari Public
🐙 A curated database of completed assemblies with taxonomy IDs
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AlleleCodes Public
Forked from gmaniscoo/AlleleCodesPython script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies
Python UpdatedFeb 20, 2026 -
parallel-feedstock Public
Forked from conda-forge/parallel-feedstockA conda-smithy repository for parallel.
Batchfile BSD 3-Clause "New" or "Revised" License UpdatedFeb 2, 2026 -
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speed-it-up Public
Computational challenges
Shell GNU General Public License v3.0 UpdatedDec 8, 2025 -
make-perl-code-faster Public
Forked from azumakuniyuki/make-perl-code-fasterBorn again "perl-benchmark-collection" repository
Perl BSD 2-Clause "Simplified" License UpdatedDec 4, 2025 -
lskScripts Public
A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if anything leaves in the future.
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BIGSdb Public
Forked from kjolley/BIGSdbBacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
Perl Other UpdatedNov 24, 2025 -
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fasten Public
👷 Fasten toolkit, for streaming operations on fastq files
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resources for bioinformatics education
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mlst-hash-template-example Public
Using the MLST hash template as an example genomic epi database
Perl GNU General Public License v3.0 UpdatedApr 29, 2025 -
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BMGAP Public
Forked from CDCgov/BMGAPThe Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples
Python Apache License 2.0 UpdatedApr 18, 2025 -
adapter_benchmark Public
Forked from boulund/adapter_benchmarkBenchmarking adapter and quality trimming tools
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