Stars
Bayesian Optimization of Hyperparameters
R package for conducting PVR with robust estimators and union eigenvector sets
Functions and code for building the FFSgam package.
R package with helper functions for summarising and visualizing HiSSE objects
Evolutionary Sparse Learning - Paired Species Contrast
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
R package of global triangular and penta-hexagonal grids based on tessellated icosahedra
Barfbow generates color palettes for a defined number of colors while allowing periodic shifts in brightness. It returns HEX codes as well as a visual summary of the resulting palette including col…
A pipeline to identify BLAST hits and perform phylogenetic analysis across multiple queries and local genome databases
bifrost is an R package for detecting shifts in multivariate evolutionary dynamics on phylogenies
Lightweight extension of the base R graphics system
R codes to perform the analyses presented in the manuscript "Macroevolutionary processes in Turtles (testudines): a view from biomic specialization and historical climatic changes" - Juan S. Thomas…
Toolkit to perform phylogenetically-informed analysis of antibiotic resistance and other genome-influenced traits
Detection of outlier genes and species in phylogenomics
Null models for categorical and continuous community data
Alternative R Frontend — a modern R console written in Rust
Bayesian Method for Environmental Phylogenetic Niche Estimation in R
Bayesian phylogenetic model that extends the Dispersal-Extinction-Cladogenesis model to consider how anagenetic and cladogenetic events cause established and enabled biome affinities (or, more gene…
R package LEMAD: Lineage Extinction Model of Ancestral Distribution
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