Tips for bioinformaticians and computational biologists

Supplementary data and figures for the paper 'Success and randomness in creative careers' published in EPJ Data Science

Convert Seurat objects to 10x Genomics Loupe files.

Using TCR and expression for sequence embedding

3 Minutes Machine Learning

🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

Companion package for the Hungarian text mining textbook

Recreation of Cole Nussbaumer Knaflic's Storytelling with Data plots using R an ggplot2

sake

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

Neuroblastoma SE landscape project

Human adrenal gland paper

Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Circadian rhythm analysis and visualisation in R

An integrated R package to evaluate periodicity in large scale data

Single Cell Epigenome-based Inference of Activity

R package to visualize gene expression data based on weighted kernel density estimation

Publication Page for MPAL Paper 2019

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

Tumor-Infiltrating CD8 Lymphocytes states prediction

R package for semi-supervised single-cell data integration

My contributions to the #TidyTuesday challenge, a weekly data visualization challenge. All plots are 💯 created in R with ggplot2.

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data