Using Deep Learning to predict gene annotations

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Source code for my Bioinformatics paper "MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans".

JackTrip: multi-machine audio network performance over the Internet.

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Find parts of long text or data, allowing for some changes/typos.

FusionInspector code

Inferring CNV from Single-Cell RNA-Seq

Trinity RNA-Seq de novo transcriptome assembly

Eukaryotic Genome Annotation Pipeline

Accelerated BLAST compatible local sequence aligner.

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.