An Open Source Machine Learning Framework for Everyone

Depth-weighted De-Mixing

Accelerated BLAST compatible local sequence aligner.

A GPT-style large language model (LLM) with no positional embeddings (NoPE).

AmiGO is a dataset of high-quality samples for protein function prediction.

An ESM2 Transformer fine-tuned to predict protein function from amino acid sequences.

The CAFA 5 dataset with protein sequence GO term and taxonomy annotations.

Tools for making plots of genomic datasets in a genome-browser-like format

python module to plot beautiful and highly customizable genome browser tracks

An autoscaling Bloom filter with ultra-low memory footprint for PHP

A Variant Call Format reader for Python.

Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa

ncER dataset

Proximal Enrichment By Approximated Sampling

Implementation of data dimensionality reduction algorithms SVD and CUR without using library functions.