An autoscaling Bloom filter with ultra-low memory footprint for PHP

Accelerated BLAST compatible local sequence aligner.

AmiGO is a dataset of high-quality samples for protein function prediction.

An ESM2 Transformer fine-tuned to predict protein function from amino acid sequences.

The CAFA 5 dataset with protein sequence GO term and taxonomy annotations.

A GPT-style large language model (LLM) with no positional embeddings (NoPE).

Implementation of data dimensionality reduction algorithms SVD and CUR without using library functions.

ncER dataset

Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa

Depth-weighted De-Mixing

A Variant Call Format reader for Python.

python module to plot beautiful and highly customizable genome browser tracks

Proximal Enrichment By Approximated Sampling

Tools for making plots of genomic datasets in a genome-browser-like format

An Open Source Machine Learning Framework for Everyone