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5 stars written in Jupyter Notebook
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Tools for making plots of genomic datasets in a genome-browser-like format

Jupyter Notebook 32 2 Updated Dec 6, 2024

Proximal Enrichment By Approximated Sampling

Jupyter Notebook 2 Updated Feb 18, 2019

AmiGO is a dataset of high-quality samples for protein function prediction.

Jupyter Notebook 1 Updated Jul 1, 2025

The CAFA 5 dataset with protein sequence GO term and taxonomy annotations.

Jupyter Notebook 1 Updated May 24, 2025

An ESM2 Transformer fine-tuned to predict protein function from amino acid sequences.

Jupyter Notebook 1 Updated Jun 27, 2025