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cell detection in calcium imaging recordings

Python 448 271 Updated May 3, 2026

Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (built on La-Proteina) with inference-time optimization.

Python 350 54 Updated May 5, 2026

Run Shiny on Python and R (compiled to wasm) in the browser

TypeScript 247 24 Updated May 1, 2026

πŸ¦– ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

Python 841 171 Updated May 17, 2026

Data validation toolkit for assessing and monitoring data quality.

Python 432 27 Updated May 16, 2026

Genomic coordinates of problematic genomic regions as GRanges

R 52 6 Updated Dec 10, 2025

This R script is designed to format FAIRe data specifically for MDT

R 1 2 Updated Jul 16, 2025

A program to analyze eDNA metabarcoding sequence data from multiple trophic levels to identify drivers and patterns of biodiversity. This program treats read counts as draws from a beta distributio…

HTML 5 1 Updated Apr 24, 2026
Python 4 Updated Feb 22, 2026

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

Shell 124,373 20,477 Updated May 15, 2026

A framework for building, orchestrating and deploying AI agents and multi-agent workflows with support for Python and .NET.

Python 10,502 1,729 Updated May 15, 2026

Creating waffle charts in a ggplot friendly way

R 71 6 Updated Feb 13, 2025

A pre-commit hook for Ruff.

Python 1,891 99 Updated May 14, 2026

cuML - RAPIDS Machine Learning Library

C++ 5,195 625 Updated May 17, 2026

skops is a Python library helping you share your scikit-learn based models and put them in production

Python 513 62 Updated Apr 20, 2026

sunburst plots for taxonomy - working to update Krona

HTML 44 1 Updated Sep 22, 2025
Python 8,430 2,395 Updated May 13, 2026

Non-linear phylogenetic regression using regularized kernels

Python 4 1 Updated Apr 1, 2026

Implementation of the Aurora model for Earth system forecasting

Python 899 148 Updated Nov 20, 2025

πŸ”₯πŸ”₯πŸ”₯ Open-source Jira, Linear, Monday, and ClickUp alternative. Plane is a modern project management platform to manage tasks, sprints, docs, and triage.

TypeScript 49,297 4,279 Updated May 15, 2026

one page guides that i let my subscribed/customised agents consume to perform actions

Python 360 31 Updated Jun 20, 2025

GNverifier verifies scientific names against more than 100 biodiversity databases

Go 37 1 Updated Mar 27, 2026

Model Context Protocol For R

R 174 15 Updated Mar 17, 2026
Python 10 1 Updated Apr 27, 2026

Access large language models from the command-line

Python 11,879 846 Updated May 17, 2026

πŸš€ The fast, Pythonic way to build MCP servers and clients.

Python 25,194 2,017 Updated May 17, 2026

Convert PDF to markdown + JSON quickly with high accuracy

Python 35,165 2,443 Updated May 5, 2026

Data and code for the manuscript

R 6 3 Updated Feb 25, 2026

Working with the outputs of sourmash in R

Standard ML 29 4 Updated Jan 15, 2026
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