OpenHPC Integration, Packaging, and Test Repo

MicroPython - a lean and efficient Python implementation for microcontrollers and constrained systems

A fresh approach to package installation

i3-compatible Wayland compositor

A board replacement for the classic Casio F-91W wristwatch

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and concatenate .fastq(.gz) files, hence the name.

Pairwise whole genome aligner

slow5lib is a software library for reading & writing SLOW5 files.

Align proteins to genomes with splicing and frameshift

Sequence-to-graph mapper and graph generator

This is the latest version of the internal repository from Pebble Technology providing the software to run on Pebble watches. Proprietary source code has been removed from this repository and it wi…

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Bidirectional WFA (Paper)

A utility for running arbitrary commands when files change. Uses kqueue(2) or inotify(7) to avoid polling. entr responds to file system events by executing command line arguments or by writing to a…

Detection of incorrectly labeled sequences across kingdoms

A statistical framework for ploidy estimation using NGS short-read data