Collect CLI tool version information from Nextflow processes and collate it for MultiQC

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Reliable, minimal and scalable library for evaluating and conducting world model research

Tool to flag foldback and chimeric artifacts in long-read sequence alignment files

edgePython is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. It also includes a new single-cell differential expression method that exte…

Ralph is an autonomous AI agent loop that runs repeatedly until all PRD items are complete.

Protein 3D structure prediction pipeline

Experiment combining OCI prestart hook and Linux Security Module to profile opened file in a Container using Podman

The R Installation Manager

Git for genomes

A SQL extension for declarative data visualisation based on the Grammar of Graphics.

Deep-learning framework for Engineering AI. Built on transformer building blocks, it delivers the full engineering stack, allowing teams to build, train, and operate industrial simulation models ac…

a set of SKILLS.md for doing bioinformatics with agents like claude code

Fast CLI tool for bird species detection using BirdNET and Perch AI models

BirdNET analyzer for scientific audio data processing.

Tokamax: A GPU and TPU kernel library.

💚 End-to-end encrypted cloud for everything.

A p2p, secure file storage, social network and application protocol

A multiscale pangenome browser

❤️🪵 Radicle Heartwood Protocol & Stack (mirror)

Repository for the BoltzGen model

The best ChatGPT that $100 can buy.

XiSearch

A board replacement for the classic Casio F-91W wristwatch

Basecalling configuration prediction through FASTQ files