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@Gregor-Mendel-Institute @conda-forge @imbforge @bioconda @nf-core

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12 results for source starred repositories written in Jupyter Notebook
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Kolmogorov Arnold Networks

Jupyter Notebook 16,163 1,548 Updated Jan 19, 2025

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Jupyter Notebook 1,291 166 Updated May 22, 2025

Early stopping for PyTorch

Jupyter Notebook 1,270 291 Updated Nov 11, 2024

Repository for the BoltzGen model

Jupyter Notebook 812 181 Updated Feb 9, 2026

Modelling human health trajectories using generative transformers

Jupyter Notebook 441 105 Updated Feb 10, 2026

Spatial alignment of single cell transcriptomic data.

Jupyter Notebook 353 63 Updated Jul 1, 2025

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

Jupyter Notebook 69 15 Updated Dec 14, 2022

Mol* as anywidget

Jupyter Notebook 50 8 Updated Oct 13, 2025

Intel lab's open sourced data science framework for accelerating digital biology

Jupyter Notebook 49 15 Updated Jan 29, 2026

SDLG is an efficient method to accurately estimate aleatoric semantic uncertainty in LLMs

Jupyter Notebook 29 2 Updated Jun 7, 2024
Jupyter Notebook 18 1 Updated May 31, 2024
Jupyter Notebook 12 2 Updated Jan 12, 2026