Stars
Ultra-strict Python project template using uv, ruff, and basedpyright, inspired by TypeScript’s --strict mode.
Open source implementation of AlphaFold3
Hera makes Python code easy to orchestrate on Argo Workflows through native Python integrations. It lets you construct and submit your Workflows entirely in Python. ⭐️ Remember to star!
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Official repository for DiffPepBuilder and DiffPepDock tools
Biological foundation modeling from molecular to genome scale
AlphaFold Meets Flow Matching for Generating Protein Ensembles
functorch is JAX-like composable function transforms for PyTorch.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
the most goated babel plugin
Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.
A simple implimentation of Bayesian Flow Networks (BFN)
A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.
🧑🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…
Practical Cheminformatics Tutorials
Outpainting with Stable Diffusion on an infinite canvas
Bilingual Language Model for Protein Sequence and Structure
Geometric GNN Dojo provides unified implementations and experiments to explore the design space of Geometric Graph Neural Networks (ICML 2023)
Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.
Awesome resources on normalizing flows.
Python package for site-directed spin labeling of proteins
A Julia-based framework for molecular modelling
Import arbitrary code from Stack Overflow as Python modules.
List of papers about Proteins Design using Deep Learning