Gene Environment Interaction Estimator

A curated list of practical Codex skills for automating workflows across the Codex CLI and API.

An agentic skills framework & software development methodology that works.

Ed's repo of Claude Code plugins, centered around a research-plan-implement workflow. Only a tiny bit cursed. If you're lucky.

Tweaks for `mkdocstrings[python]`

JAXMg: A multi-GPU linear solver in JAX

Structural Time Series in JAX

SParse lINear solvers in JAX

The computational and statistical analyses of TenK10K phase 1 multiome data

A library for easy, fast, and efficient reading & writing of PLINK Bed files

A fast and flexible Python package for efficiently solving lasso, elastic net, group lasso, and group elastic net problems.

Simulation of exact paths for the Wright-Fisher diffusion and diffusion-bridge

CLI interfaces & config objects, from types

Code for implementing central flows

Manopt, a Matlab toolbox for optimization on manifolds

Intuitive, easy CLIs based on python type hints.

Rich is a Python library for rich text and beautiful formatting in the terminal.

An extremely fast Python package and project manager, written in Rust.

Scripts for Spectral IBD Component Calculation

scGeneHE software - under construction

Modeling complex perturbations with CellFlow

Backported and experimental type hints for Python

Probabilistic Programming and Nested sampling in JAX

A debugging and profiling tool that can trace and visualize python code execution

Geometric algebra in JAX and numpy