Name		Name	Last commit message	Last commit date
.idea		.idea
ssw		ssw
test		test
.gitattributes		.gitattributes
.gitignore		.gitignore
N50.py		N50.py
__init__.py		__init__.py
adaptor_trim.py		adaptor_trim.py
align.py		align.py
alignmap.py		alignmap.py
blast.py		blast.py
bps.py		bps.py
check_N.py		check_N.py
cons.py		cons.py
fill_N.md		fill_N.md
nfill-finished.ipynb		nfill-finished.ipynb
parse_edge.py		parse_edge.py
readme.md		readme.md
sequence_insert.py		sequence_insert.py
sequence_replace.py		sequence_replace.py
summary_N.py		summary_N.py
testssw.py		testssw.py
utils.py		utils.py

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The package for long read re-sequencing.

The basic step is like:

1. find the gaps and fill them

2. find the insertion and fill them

3. find the gaps again and fill them

4. find the breakpoint and parse them

5. find the possible layout of the newly filled sequence.

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Long read python processing tools

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