Welcome to the POP-TOOLS wiki!

POP-TOOLS (POst-Prediction TOOLS) is a Python3-based command line toolkit for conducting valid and powerful machine learning (ML)-assisted genetic association studies. In this wiki, we provide tutorials on POP-TOOLS for different tasks.

0. Preparation for POP‐TOOLS: Installation, required modules, and input data format for POP-TOOLS.

1. POP‐GWAS: Valid and powerful ML-assisted GWAS for quantitative and binary phenotypes using POP-GWAS.

2. POP‐GWAS for Rare‐Variant Association Studies: Valid and powerful ML-assisted Rare‐Variant Association Studies for quantitative and binary phenotypes using POP-RARE.

FAQ: Frequently asked questions related to POP-TOOLS.