Stars
Demo project to demonstrate the use of the Kafka queues for the enrichment services. In the example Image information is gathered and added to the OpenDS
Source code for TreeBASE web application and database
Bible chapters and verses in JSON format. Each of the 66 books is a separate JSON file.
A transformer model for DNA barcode representation learning and taxonomic classification.
This fork will contain the DiSSCo specific implementation of the name usage search of the col-nusearch-service.
This repository provides basic functionality to index a ColDP from checklist bank and run a name resolution service over it.
An RO-Crate profile for Biodiversity Genomics objects
A Model Context Protocol (MCP) server that enables LLMs to interact directly with Couchbase databases. Query buckets, execute N1QL queries, and manage data seamlessly through natural language.
save 200 a month and use deep research right in your terminal. - port of https://github.com/dzhng/deep-research but in python
An AI-powered research assistant that performs iterative, deep research on any topic by combining search engines, web scraping, and large language models. The goal of this repo is to provide the si…
A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of ribosomal genes from genome skims
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
creating reference databases for amplicon sequencing
The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
GPU-accelerated DNA barcode classification
BOLDigger as a commandline tool
A python package to query different databases of boldsystems.org
Packaging a IEEE 2791 described BioCompute Object as RO-Crate, using nf-core/chipseq as example
A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
Pipeline for building topologically-constrained phylogenies from DNA barcode data
BSc Project at Leiden University for generating and updating a fungal phylogenetic tree based on MDDB