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airdilutionolfactometer Public
Air dilution olfactometer design
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file-tools Public
My personal collection of Python tools for handling file operations
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 12, 2025 -
poisson-numcodecs Public
Forked from neuroinformatics-unit/poisson-numcodecsNumcodecs implementation of photon conversion using poisson statistics
Python MIT License UpdatedFeb 12, 2025 -
matlab-instrument-control Public
Forked from LidkeLab/matlab-instrument-controlA collection of MATLAB classes to control various equipment used in fluorescence microscopy
MATLAB MIT License UpdatedJan 22, 2025 -
sigstar Public
add significance stars to MATLAB plots
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shadedErrorBar Public
Produce elegant shaded error bars in MATLAB
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matlab_elastix Public
MATLAB Elastix wrapper
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at-image Public
Forked from CristiSoitu/at-imageregistration playground code
Python UpdatedFeb 15, 2024 -
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EZ-mesoSPIM-zoom1 Public
Simple pipeline for handling low zoom mesoSPIM data
Python MIT License UpdatedMay 18, 2023 -
neuropixels_trajectory_explorer Public
Forked from petersaj/neuropixels_trajectory_explorerNeuropixels trajectory explorer with the Allen CCF mouse atlas
MATLAB GNU General Public License v3.0 UpdatedJan 4, 2023 -
pythonator-123 Public
testing package for learning about python packaging
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2022 -
matlab-tree Public
Forked from tinevez/matlab-treeA MATLAB class to represent the tree data structure.
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mesoSPIM-control Public
Forked from mesoSPIM/mesoSPIM-controlImage acquisition software for mesoSPIM light-sheet microscopes.
Jupyter Notebook GNU General Public License v3.0 UpdatedNov 28, 2022 -
matlab-TileFigures Public
Forked from lemelech/matlab-TileFiguresAn easy way to tile figures across the screen, or multiple screens.
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ilastik_serial_section Public
loose collection of functions for assisting processing of mouse brain serial section data with Ilastik
Python GNU General Public License v3.0 UpdatedMay 26, 2022 -
matlab_wizard Public
Low-level classes for constructing wizard GUIs in MATLAB
MATLAB GNU Lesser General Public License v2.1 UpdatedSep 14, 2021 -
A-Level-Set-Method-Based-on-Additive-Bias-Correction-for-Image-Segmentation Public
Forked from sdjswgr/A-Level-Set-Method-Based-on-Additive-Bias-Correction-for-Image-SegmentationMatlab code for the paper: A Level Set Method Based on Additive Bias Correction for Image Segmentation
MATLAB UpdatedAug 24, 2021 -
openstage Public
Arduino-based microscope stage controller
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BakingTray Public
Forked from vollrathf/BakingTraySerial-section automated anatomy extension for ScanImage
MATLAB GNU Lesser General Public License v3.0 UpdatedFeb 5, 2021 -
notBoxPlot Public
plots things that are not boxplots
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two-photon-toolbox Public
Basic toolbox for analysis of in vivo 2-photon data. Originally written at Glenn Turner's lab, CSHL, when I was working with flies.
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lcdmenu Public
Arduino menu class for LCD character displays
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alicat-matlab Public
Control Alicat flow controllers from MATLAB
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mrubicks Public
MATLAB Rubik's cube plots
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settings_handler Public
MATLAB class for user settings
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imgzoompan Public
Forked from danyalejandro/imgzoompanMATLAB code that provides mouse zoom & pan functionality for 2D images.
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Mouse_Brain_Registration Public
Forked from nitinagarwal/Mouse_Brain_RegistrationGeometry Processing of Conventionally Produced Mouse Brain Slice Images
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yamlmatlab Public
Forked from ewiger/yamlmatlabJava-based implementation of YAML IO support in MATLAB.
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