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1. braingeneers/cytoverse braingeneers/cytoverse Public

   Search and display cells in foundation model embedding space

   Jupyter Notebook 8 1

2. braingeneers/sims-web braingeneers/sims-web Public

   Attempt to run SIMS inference in the browser

   Python 2 1

3. qt45 qt45 Public

   A self-improving agentic loop inspired by QT45: a 45-nucleotide RNA ribozyme capable of self-replication.

   Rust

4. pancan-gtex pancan-gtex Public

   Ingest, classify and explain pancan-gtex via keras and tensorflow

   Jupyter Notebook 7

5. BRCAChallenge/literature-search BRCAChallenge/literature-search Public

   Crawl and annotate pubmed articles with variants

   Jupyter Notebook 3 6

6. UCSC-Treehouse/pipelines UCSC-Treehouse/pipelines Public

   Makefiles to run dockerized pipelines used in Treehouse on a single sample

   Makefile 3 6