An agentic skills framework & software development methodology that works.

Beads - A memory upgrade for your coding agent

Dark Data Discovery for Neuro Datasets

Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.

Code and steps used to generate the Data Citation Corpus dump file

Library and command-line utility for rendering projects templates.

A library for designing and training deep learning models for neural data.

Neural data preprocessing pipelines

💫 Toolkit to help you get started with Spec-Driven Development

NWB extension for working with multi-subjects data

KIASORT: Knowledge-Integrated Automated Spike Sorting for Geometry-Free Neuron Tracking

The python library for research and development in NLP, multimodal LLMs, Agents, ML, Knowledge Graphs, and more.

Standalone utilities for SLEAP pose tracking data.

A Sphinx extension for adding "🐱 Nekochan(cat) emojis" to documents

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

all the features of AI with 100% compute efficiency and no hardware requirements

Cloud-Optimize your Scientific Data as Virtual Zarr stores, using xarray syntax.

A curated list of Modeling papers, Datasets, Experimental papers, Code Repositories, and Benchmarks for Foundation Model for the Brain

🤗 smolagents: a barebones library for agents that think in code.

LlamaIndex is the leading document agent and OCR platform

Asynchronous Python ODM for MongoDB

A Python toolbox for analysing animal body movements across space and time

Open-source, cloud-native transactional tensor storage engine

Pydantic models for Zarr

An automated, end-to-end, machine-learning-based spike sorting pipeline following the DeepCluster method