A standalone and lightweight C library

Official home of genome aligner based upon notion of Cactus graphs

4store is an efficient, scalable and stable RDF database.

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 1…

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

A WGS de novo assembler based on the FMD-index for large genomes

FM-index representation of a de Bruijn graph

4sr

Breakpointer is a fast algorithm to locate breakpoints of structural variants from single-end reads produced by next-generation sequencing.

Experimental bcftools port to support BCF2; DEPRECATED by htslib and htsbox