Tools for scientific computation in Ruby

A set of bindings for the GNOME libraries to use from Ruby.

bioruby

ActiveModel-style Ruby ORM for RDF Linked Data. Works with SPARQL 1.1 HTTP endpoints.

A plotting library in Ruby built on top of Vega and D3.

This plugins is intended to wrap the common software used for Next Generation Sequencing data

Bio::Graphics is a ruby library for visualizing annotations on chromosomes

Fast big data XML parser and library, written in Ruby

TODO: one-line summary of your gem

GFF3 plugin for BioRuby - allows parsing big data GFF3

New age BioRuby website

Bioinformatics parsing and filtering data for triple-stores

GUI frontend for the velvet genome assembler

Tool to create and distribute jobs on a queue system

TODO: one-line summary of your gem

A parser for the OBO flat file format

New age BioRuby website

A library that allows you to pull ruby objects out of a Chado-schema database

A plugin that allows you to parse large blast XML output files lazily, reading only what you need.

An easy way of performing some common operations on fasta files

Storage and edit history for ACNFP gene models.

A very quick and dirty project to help out a colleague

Tools for taking GeneMark output and pulling out the relevant sequences from the original fasta file.