A concise API for exploratory data visualization implementing a layered grammar of graphics

Free and Open-source Bootstrap 5 Admin Dashboard Template and Landing Page

Create, edit and display a journal article, entirely in GitHub

WebAssembly modules for genomics

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

BSR-Based Allele Calling Algorithm

Find clustered hits from a BLAST search

Phigaro is a scalable command-line tool for predicting phages and prophages

µbinfie blog

snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

A nextflow pipeline that accommodates different sequencing technologies (Illumina or Nanopore), sample types (clinical or wastewater), and viral targets (Influenza or RSV).

An analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)

This repository contains an analysis pipeline developed to characterize WGS output

Method for Assignment, Definition and Designation of Global lineages

AMR pipeline for M. tuberculosis - the cousin of abriTAMR

SNVPhyl nf-core Pipeline (Development)

Nextflow pipeline to preprocess metagenomics reads