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5 results for source starred repositories written in Java
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A quality control analysis tool for high throughput sequencing data

Java 558 105 Updated Dec 15, 2025

Simple test framework for Nextflow pipelines

Java 173 36 Updated Nov 3, 2025

Mining CRISPRs in Environmental Datasets

Java 116 20 Updated Feb 10, 2023

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…

Java 60 7 Updated Nov 26, 2025

A dictionary-based method for pan-genomic contents discovery.

Java 3 3 Updated Nov 24, 2023